Lab Members
 | |
 | |
 |
Former Lab Members
| Duman Shresht, M.S. |
| Weimin Cai, M.S. |
| Sabrina Downing, B.S. |
| Mark Steele, B.S. |
| Sophie Lavigne, B.S. |
| James Kruczek, Ph.D. |
| Joeseph Fogarty, Ph.D. |
| James Lyon, M.S. |
| Brad Bennet, M.S. |
Collaborators
Dr. Sameer Varma, Dept. of Cell Biology, Microbiology and Molecular Biology, USFDr. Adri van Duin, Dept. of Mechanical and Nuclear Engineering, Penn State University
Dr. Ananth Grama, Dept. of Computer Science, Purdue University
Dr. Garret Matthews, Dept. of Physics, USF
Dr. Martin Muschol, Dept. of Physics, USF
Dr. Gauri Pradhan, Dept of Intregrative Biology, USF
Dr. Yicheng Tu, Dept. of Computer Science, USF
Dr. Carel van Schaik, Director of the Anthropological Institute & Museum, University of Zurich
Dr. H. Larry Scott, Dept. of Biological, Physical, and Chemical Science, Illinois Institute of Technology
The USF Computational Soft Matter Lab focuses on simulations and investigations
of the structure
and processes of biological systems.
Biophysics
Monovalent and Divalent Ion-Membrane Interactions |
Archeal Diether Lipids and Ion-Membrane Interactions |
Acidic Lipid Bilayers and Counterion-Membrane Interactions |
Oxidative Damage |
Heterogeneous Lipid Mixtures |
Atomistic Simulations |
Multiscale Simulations |
Complexation in Lipid/Cholesterol System |
Collagen |
Peptide Coarse Graining |
Methodology
ParOpt |
Parameter Development for Mixed Force-Fields |
Reax |
Silica |
Modeling Complex Systems
Primate Infanticide |
Coalition Formation |
|
Ceramide |
|
Silica Interface |
|
Lipid Bilayer with Hydrogen Peroxide |
|
General Parameter and Force Field Optimization (ParOpt) |
Parallel Reactive Molecular Dynamics (PuReMD) |
Training Set Generation (TrainGen) |